*
*/
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <vector>
#include "command.hpp"
#include "sharedordervector.h"
#include "sharedlistvector.h"
#include "inputdata.h"
-#include "groupmap.h"
#include "rarefact.h"
#include "display.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
+#include "validcalculator.h"
+#include "sharedutilities.h"
/* The rarefaction.shared() command:
The rarefaction command generates a rarefaction curve from a given file representing several groups.
private:
GlobalData* globaldata;
- GroupMap* groupmap;
+ SharedUtil* util;
SharedListVector* SharedList;
- ReadMatrix* read;
+ ReadOTUFile* read;
SharedOrderVector* order;
InputData* input;
+ ValidCalculators* validCalculator;
Rarefact* rCurve;
vector<Display*> rDisplays;
int freq, nIters;
+ string format;
};
-#endif
\ No newline at end of file
+#endif