#include "inputdata.h"
#include "rarefact.h"
#include "display.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
#include "validcalculator.h"
class RareFactCommand : public Command {
public:
- RareFactCommand();
+ RareFactCommand(string);
~RareFactCommand();
- int execute();
+ int execute();
+ void help();
private:
GlobalData* globaldata;
vector<Display*> rDisplays;
- ReadMatrix* read;
+ ReadOTUFile* read;
OrderVector* order;
InputData* input;
ValidCalculators* validCalculator;
Rarefact* rCurve;
int freq, nIters, abund;
+
+ bool abort, allLines;
+ set<int> lines; //hold lines to be used
+ set<string> labels; //holds labels to be used
+ string line, label, calc;
+ vector<string> Estimators;
+
};
#endif