* Mothur
*
* Created by Thomas Ryabin on 3/4/09.
- * Copyright 2009 __MyCompanyName__. All rights reserved.
+ * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "qstat.h"
-#include "calculator.h"
+
/***********************************************************************/
int r3Ind = 0;
int sumSpec = 0;
int iqSum = 0;
- for(int i = 1; i < rank->size(); i++)
- {
+ for(int i = 1; i < rank->size(); i++) {
if(r1 != -1 && r3 != -1)
i = rank->size();
sumSpec += rank->get(i);
- if(r1 == -1 && sumSpec >= numSpec*.25)
- {
+ if(r1 == -1 && sumSpec >= numSpec*.25) {
r1 = rank->get(i);
r1Ind = i;
}
- else if(r3 == -1 && sumSpec >= numSpec*.75)
- {
+ else if(r3 == -1 && sumSpec >= numSpec*.75) {
r3 = rank->get(i);
r3Ind = i;
}
}
double qstat = (.5*r1 + iqSum + .5*r3)/log((double)r3Ind/r1Ind);
- //cout << "QStat:\nQStatistic = " << qstat << "\n\n";
data[0] = qstat;
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the NPShannon class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "QStat", "getValues");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the NPShannon class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
/***********************************************************************/