-Related packages
-================
+Packages for the complete FSL suite
+===================================
Since FSL covers a very broad range of analysis techniques the suite is split
into a number of separate packages to allow a more fine-grained selection of
the functionality provided by FSL. The following related packages are available:
-:ref:`deb_fsl`
+:ref:`pkg_fsl`
This packages provides the FSL binaries. This includes everything one needs
to run a basic fMRI analysis. However, it is recommend to also at least
- install the :ref:`fsl-atlases <deb_fsl-atlases>` package.
+ install the :ref:`fsl-atlases <pkg_fsl-atlases>` package.
-:ref:`deb_fslview`
+:ref:`pkg_fslview`
Almost everybody should install this package.
-:ref:`deb_fsl-doc`
+:ref:`pkg_fsl-doc`
Contains the FSL documentation in HTML format as included in the official FSL
sources. This package should be installed to use the online help capabilities
of FSL.
-:ref:`deb_fslview-doc`
+:ref:`pkg_fslview-doc`
The FSLView documentation in HTML format. This package is necessary for the
online help system of FSLView.
-:ref:`deb_fsl-atlases`
+:ref:`pkg_fsl-atlases`
Contains the standard space brain templates and brain atlases. Almost
everybody should install this package.
-:ref:`deb_fsl-possum-data`
+:ref:`pkg_fsl-possum-data`
This package provides the templates for the MR sequence simulator POSSUM.
If one does not use POSSUM this package is not necessary.
-:ref:`deb_fsl-first-data`
+:ref:`pkg_fsl-first-data`
This package provides model data for FIRST subcortical brain segmentation.
This package is almost 1GB! It is only required if one wants to use FIRST
or run the FSL FEEDS suite.
-:ref:`deb_fsl-feeds`
+:ref:`pkg_fsl-feeds`
This package provides the `FSL Evaluation and Example Data Suite`_. This
package performs two functions -- it tests whether the FSL tools are working
properly and it provides example data to try running FSL on. Additionally the
with the logfile of the benchmark. You can run the benchmark (and create the
logfile) by running (fsl-feeds-3.2beta-3 or higher is required)::
- (time -p fsl-selftest -c) > benchmark.log 2>&1
+ (time -p fsl-selftest -c) > benchmark.log 2>&1
And include the following information in your message: