private:
bool abort, allLines;
- string taxonomyFileName, label, outputDir, namefile;
+ string taxonomyFileName, label, outputDir, namefile, countfile;
set<string> labels; //holds labels to be used
int cutoff;
map<string, string> namemap;
vector<string> outputNames;
- map<string, vector<string> > outputTypes;
map<int, int> currentNodes;
map<int, int> parentNodes;