private:
bool abort, allLines;
- string taxonomyFileName, label;
+ string taxonomyFileName, label, outputDir, namefile;
set<string> labels; //holds labels to be used
int cutoff;
+ map<string, string> namemap;
map<int, int> currentNodes;
map<int, int> parentNodes;
map<int, int>::iterator itCurrent;
+
+ int readNamesFile();
};