*/
#include "mothur.h"
+#include "mothurout.h"
class Alignment;
class Sequence;
public:
Nast(Alignment*, Sequence*, Sequence*);
+ ~Nast(){};
float getSimilarityScore();
int getMaxInsertLength();
Sequence* templateSeq;
int maxInsertLength;
+ MothurOut* m;
};
/**************************************************************************************************/