sub wgsim_eval {
my %opts = (g=>5);
- getopts('pcg:', \%opts);
- die("Usage: wgsim_eval.pl [-pc] [-g $opts{g}] <in.sam>\n") if (@ARGV == 0 && -t STDIN);
- my (@c0, @c1);
+ getopts('pcag:', \%opts);
+ die("Usage: wgsim_eval.pl [-pca] [-g $opts{g}] <in.sam>\n") if (@ARGV == 0 && -t STDIN);
+ my (@c0, @c1, %fnfp);
my ($max_q, $flag) = (0, 0);
my $gap = $opts{g};
$flag |= 1 if (defined $opts{p});
}
++$c0[$q];
++$c1[$q] unless ($is_correct);
+ @{$fnfp{$t[4]}} = (0, 0) unless (defined $fnfp{$t[4]});
+ ++$fnfp{$t[4]}[0];
+ ++$fnfp{$t[4]}[1] unless ($is_correct);
print STDERR $line if (($flag&1) && !$is_correct && $q > 0);
}
# print
my ($cc0, $cc1) = (0, 0);
- for (my $i = $max_q; $i >= 0; --$i) {
- $c0[$i] = 0 unless (defined $c0[$i]);
- $c1[$i] = 0 unless (defined $c1[$i]);
- $cc0 += $c0[$i]; $cc1 += $c1[$i];
- printf("%.2dx %12d / %-12d %12d %.3e\n", $i, $c1[$i], $c0[$i], $cc0, $cc1/$cc0);
+ if (!defined($opts{a})) {
+ for (my $i = $max_q; $i >= 0; --$i) {
+ $c0[$i] = 0 unless (defined $c0[$i]);
+ $c1[$i] = 0 unless (defined $c1[$i]);
+ $cc0 += $c0[$i]; $cc1 += $c1[$i];
+ printf("%.2dx %12d / %-12d %12d %.3e\n", $i, $c1[$i], $c0[$i], $cc0, $cc1/$cc0) if ($cc0);
+ }
+ } else {
+ for (reverse(sort {$a<=>$b} (keys %fnfp))) {
+ next if ($_ == 0);
+ $cc0 += $fnfp{$_}[0];
+ $cc1 += $fnfp{$_}[1];
+ print join("\t", $_, $cc0, $cc1), "\n";
+ }
}
}