fixed a bug in generating tag AM

[samtools.git] / misc / maq2sam.c

diff --git a/misc/maq2sam.c b/misc/maq2sam.c
index 70ecf4145a73db6265b5df61cf18270b87d3f1c5..6eaf2c6257a33a43e81b62f5ce948253ade81590 100644 (file)
--- a/misc/maq2sam.c
+++ b/misc/maq2sam.c
@@ -148,7 +148,7 @@ void maq2tam_core(gzFile fp, const char *rg)
                        printf("MF:i:%d\n", m1->flag);
                } else {
                        printf("MF:i:%d\t", m1->flag);
-                       if (m1->flag) printf("Aq:i:%d\t", m1->alt_qual);
+                       if (m1->flag) printf("AM:i:%d\t", m1->alt_qual);
                        printf("NM:i:%d\tUQ:i:%d\tH0:i:%d\tH1:i:%d\n", m1->info1&0xf, m1->info2, m1->c[0], m1->c[1]);
                }
        }