CXXFLAGS= $(CFLAGS)
DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
-PROG= md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim
+PROG= md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim bamcheck
INCLUDES= -I..
SUBDIRS= .
lib:
+bamcheck:bamcheck.o
+ $(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam -lpthread
+
+bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
+ $(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c
+
ace2sam:ace2sam.o
$(CC) $(CFLAGS) -o $@ ace2sam.o -lz