Added rule for bamcheck creation

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
index d2f8bd8ea56c74709f4f0d426787db3cd6c52dd9..9434399bdc6a08245a013d19c8a598b9151ce644 100644 (file)
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -4,7 +4,7 @@ CFLAGS=         -g -Wall -O2 #-m64 #-arch ppc
 CXXFLAGS=      $(CFLAGS)
 DFLAGS=                -D_FILE_OFFSET_BITS=64
 OBJS=          
-PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long wgsim seqtk
+PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim seqtk bamcheck
 INCLUDES=      -I..
 SUBDIRS=       .
 
@@ -27,6 +27,12 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+bamcheck:bamcheck.o
+               $(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam
+
+ace2sam:ace2sam.o
+               $(CC) $(CFLAGS) -o $@ ace2sam.o -lz
+
 seqtk:seqtk.o
                $(CC) $(CFLAGS) -o $@ seqtk.o -lm -lz
 
@@ -57,6 +63,9 @@ seqtk.o:seqtk.c ../khash.h ../kseq.h
 wgsim.o:wgsim.c ../kseq.h
                $(CC) $(CFLAGS) -c -I.. -o $@ wgsim.c
 
+ace2sam.o:ace2sam.c ../kstring.h ../kseq.h
+               $(CC) $(CFLAGS) -c -I.. -o $@ ace2sam.c
+
 cleanlocal:
                rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a