CXX= g++
CFLAGS= -g -Wall -O2 -m64 #-arch ppc
CXXFLAGS= $(CFLAGS)
-DFLAGS= #-D_FILE_OFFSET_BITS=64
+DFLAGS= -D_FILE_OFFSET_BITS=64
OBJS=
-PROG= faidx md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
+PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
INCLUDES= -I..
-LIBS= -lm -lz
SUBDIRS= .
.SUFFIXES:.c .o
wdir=`pwd`; \
list='$(SUBDIRS)'; for subdir in $$list; do \
cd $$subdir; \
- $(MAKE) CC="$(CC)" CXX="$(CXX)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
+ $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
INCLUDES="$(INCLUDES)" $$target || exit 1; \
cd $$wdir; \
done;
wgsim:wgsim.o
$(CC) $(CFLAGS) -o $@ wgsim.o -lm
-faidx:../faidx.c ../faidx.h
- $(CC) $(CFLAGS) -D_NO_RAZF -DFAIDX_MAIN -o $@ ../faidx.c
-
md5fa:md5.o md5fa.o md5.h ../kseq.h
$(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
$(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
cleanlocal:
- rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
+ rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a
clean:cleanlocal-recur