* samtools-0.1.2-16

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
index de37cd489281b5e6e43b645c825fcd7a471a4fbb..0f65881232e2e9d6558dafb45b7dbfcbc5790ce2 100644 (file)
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -5,7 +5,7 @@ CXXFLAGS=       $(CFLAGS)
 DFLAGS=                #-D_FILE_OFFSET_BITS=64
 OBJS=          
 PROG=          faidx md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
-INCLUDES=
+INCLUDES=      -I..
 LIBS=          -lm -lz
 SUBDIRS=       .
 
@@ -37,8 +37,11 @@ faidx:../faidx.c ../faidx.h
 md5fa:md5.o md5fa.o md5.h ../kseq.h
                $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
 
-md5sum-lite:md5.c md5.h
-               $(CC) $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c
+md5sum-lite:md5sum-lite.o
+               $(CC) $(CFLAGS) -o $@ md5sum-lite.o
+
+md5sum-lite.o:md5.c md5.h
+               $(CC) -c $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c
 
 maq2sam-short:maq2sam.c
                $(CC) $(CFLAGS) -o $@ maq2sam.c -lz