* samtools-0.1.3-7 (r246)

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
deleted file mode 100644 (file)
index 0f65881..0000000
--- a/misc/Makefile
+++ /dev/null
@@ -1,58 +0,0 @@
-CC=                    gcc
-CXX=           g++
-CFLAGS=                -g -Wall -O2 -m64 #-arch ppc
-CXXFLAGS=      $(CFLAGS)
-DFLAGS=                #-D_FILE_OFFSET_BITS=64
-OBJS=          
-PROG=          faidx md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
-INCLUDES=      -I..
-LIBS=          -lm -lz
-SUBDIRS=       .
-
-.SUFFIXES:.c .o
-
-.c.o:
-               $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
-
-all:$(PROG)
-
-lib-recur all-recur clean-recur cleanlocal-recur install-recur:
-               @target=`echo $@ | sed s/-recur//`; \
-               wdir=`pwd`; \
-               list='$(SUBDIRS)'; for subdir in $$list; do \
-                       cd $$subdir; \
-                       $(MAKE) CC="$(CC)" CXX="$(CXX)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
-                               INCLUDES="$(INCLUDES)" $$target || exit 1; \
-                       cd $$wdir; \
-               done;
-
-lib:
-
-wgsim:wgsim.o
-               $(CC) $(CFLAGS) -o $@ wgsim.o -lm
-
-faidx:../faidx.c ../faidx.h
-               $(CC) $(CFLAGS) -D_NO_RAZF -DFAIDX_MAIN -o $@ ../faidx.c
-
-md5fa:md5.o md5fa.o md5.h ../kseq.h
-               $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
-
-md5sum-lite:md5sum-lite.o
-               $(CC) $(CFLAGS) -o $@ md5sum-lite.o
-
-md5sum-lite.o:md5.c md5.h
-               $(CC) -c $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c
-
-maq2sam-short:maq2sam.c
-               $(CC) $(CFLAGS) -o $@ maq2sam.c -lz
-
-maq2sam-long:maq2sam.c
-               $(CC) $(CFLAGS) -DMAQ_LONGREADS -o $@ maq2sam.c -lz
-
-md5fa.o:md5.h md5fa.c
-               $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
-
-cleanlocal:
-               rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
-
-clean:cleanlocal-recur