r579: after merging Peter's depad changes

[samtools.git] / misc / HmmGlocal.java

diff --git a/misc/HmmGlocal.java b/misc/HmmGlocal.java
index 469eda654b376b7d76411af57ca18fdc22d70441..9e93b13bf9be72a208dfda69abc8ffbb43b78f50 100644 (file)
--- a/misc/HmmGlocal.java
+++ b/misc/HmmGlocal.java
@@ -4,7 +4,7 @@ import java.lang.*;
 public class HmmGlocal
 {
        private double[] qual2prob;
-       private double cd, ce; // gap open probility [1e-4], gap extension probability [0.1]
+       private double cd, ce; // gap open probility [1e-3], gap extension probability [0.1]
        private int cb; // band width [7]
 
        public HmmGlocal(final double d, final double e, final int b) {