}
\details{
If the sequences are in a list, all the sequences must be of the same
- length.
+ length. Ambiguous nucleotides are ignored.
}
\value{
- A numeric vector giving the indices of the segregating sites.
+ A numeric (integer) vector giving the indices of the segregating
+ sites.
}
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
\note{
The present version looks for the sites which are ``variable'' in the
data in terms of different \emph{letters}. This may give unexpected
results if there are ambiguous bases in the data.
}
\seealso{
- \code{\link{base.freq}}, \code{\link{GC.content}},
- \code{\link{theta.s}}, \code{\link{nuc.div}}
+ \code{\link{base.freq}}, \code{\link[pegas]{theta.s}},
+ \code{\link[pegas]{nuc.div}}
}
\examples{
data(woodmouse)