new option 'draw' in plot.phylo()

[ape.git] / man / rlineage.Rd

diff --git a/man/rlineage.Rd b/man/rlineage.Rd
index dd36c0fed441ac17ba16edfe949f753b8b40fb9a..c37bd6d405ec21ad627d4d621bd08a5d79cfffbd 100644 (file)
--- a/man/rlineage.Rd
+++ b/man/rlineage.Rd
@@ -15,7 +15,7 @@ rlineage(birth, death, Tmax = 50, BIRTH = NULL,
          DEATH = NULL, eps = 1e-6)
 rbdtree(birth, death, Tmax = 50, BIRTH = NULL,
         DEATH = NULL, eps = 1e-6)
-drop.fossil(phy, tol = 0)
+drop.fossil(phy, tol = 1e-8)
 }
 \arguments{
   \item{birth, death}{a numeric value or a (vectorized) function
@@ -35,7 +35,7 @@ drop.fossil(phy, tol = 0)
   Both functions use continuous-time algorithms described in the
   references. The models are time-dependent birth--death models as
   described in Kendall (1948). Speciation (birth) and extinction (death)
-  rates may be constant or vary through time according to an R function
+  rates may be constant or vary through time according to an \R function
   specified by the user. In the latter case, \code{BIRTH} and/or
   \code{DEATH} may be used of the primitives of \code{birth} and
   \code{death} are known. In these functions time is the formal argument
@@ -48,9 +48,9 @@ drop.fossil(phy, tol = 0)
   Kendall, D. G. (1948) On the generalized ``birth-and-death''
   process. \emph{Annals of Mathematical Statistics}, \bold{19}, 1--15.
 
-  Paradis, E. (2010) Time-dependent speciation and extinction from
-  phylogenies: a least squares approach. (under revision)
-  %\emph{Evolution}, \bold{59}, 1--12.
+  Paradis, E. (2011) Time-dependent speciation and extinction from
+  phylogenies: a least squares approach. \emph{Evolution}, \bold{65},
+  661--672.
 }
 \author{Emmanuel Paradis}
 \seealso{