removing evolve.phylo + bug fix in as.phylo.hclust

[ape.git] / man / read.dna.Rd

diff --git a/man/read.dna.Rd b/man/read.dna.Rd
index af26aa7b1655fa90148f6edc23a5a1fcb5888ab4..4c02232ba8d332708162c35d257fdac66066415b 100644 (file)
--- a/man/read.dna.Rd
+++ b/man/read.dna.Rd
@@ -47,6 +47,7 @@ read.dna(file, format = "interleaved", skip = 0,
   the file unless the `seq.names' option is used. Particularities for
   each format are detailed below.
 
+\itemize{
   \item{Interleaved:}{the function starts to read the sequences when it
     finds 10 contiguous characters belonging to the ambiguity code of
     the IUPAC (namely A, C, G, T, U, M, R, W, S, Y, K, V, H, D, B, and
@@ -73,7 +74,7 @@ read.dna(file, format = "interleaved", skip = 0,
     leading spaces before this character). These lines are taken as taxa
     names after removing the ``>'' and the possible leading and trailing
     spaces. All the data in the file before the first sequence is ignored.}
-}
+}}
 \value{
   a matrix or a list (if \code{format = "fasta"}) of DNA sequences
   stored in binary format, or of mode character (if \code{as.character =
@@ -94,7 +95,7 @@ read.dna(file, format = "interleaved", skip = 0,
   \code{\link{read.GenBank}}, \code{\link{write.dna}},
   \code{\link{DNAbin}}, \code{\link{dist.dna}}, \code{\link{woodmouse}}
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \examples{
 ### a small extract from `data(woddmouse)'
 cat("3 40",