bug fix in read.nexus + new ?ape man page

[ape.git] / man / plot.phylo.Rd

diff --git a/man/plot.phylo.Rd b/man/plot.phylo.Rd
index 8ac1519c7a198c22257cbae831c28f1626932e10..b9622effade18c75f51e094c2e97b44eb4bc8586 100644 (file)
--- a/man/plot.phylo.Rd
+++ b/man/plot.phylo.Rd
@@ -102,8 +102,7 @@
   \code{...} and could be any one of those listed above for a single
   tree.
 
-  The formatting of the labels of both the nodes and the tips is the
-  same.
+  The font format of the labels of the nodes and the tips is the same.
 
   If \code{no.margin = TRUE}, the margins are set to zero and are not
   restored after plotting the tree, so that the user can access the
@@ -131,30 +130,33 @@
   give a nice result: the user may check these values with the
   (invisibly) returned list (see ``Value:'').
 
-  Note that if you resize manually the graphical device (windows or X11)
-  you may need to replot the tree.
+  If you resize manually the graphical device (windows or X11) you may
+  need to replot the tree.
+}
+\note{
+  The argument \code{asp} cannot be passed with \code{\dots}.
 }
 \value{
   \code{plot.phylo} returns invisibly a list with the following
   components which values are those used for the current plot:
 
-  \item{type}
-  \item{use.edge.length}
-  \item{node.pos}
-  \item{show.tip.label}
-  \item{show.node.label}
-  \item{font}
-  \item{cex}
-  \item{adj}
-  \item{srt}
-  \item{no.margin}
-  \item{label.offset}
-  \item{x.lim}
-  \item{y.lim}
-  \item{direction}
-  \item{tip.color}
-  \item{Ntip}
-  \item{Nnode}
+  \item{type}{}
+  \item{use.edge.length}{}
+  \item{node.pos}{}
+  \item{show.tip.label}{}
+  \item{show.node.label}{}
+  \item{font}{}
+  \item{cex}{}
+  \item{adj}{}
+  \item{srt}{}
+  \item{no.margin}{}
+  \item{label.offset}{}
+  \item{x.lim}{}
+  \item{y.lim}{}
+  \item{direction}{}
+  \item{tip.color}{}
+  \item{Ntip}{}
+  \item{Nnode}{}
 }
 \author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
 \seealso{