final update for ape 2.7-1

[ape.git] / man / phymltest.Rd

diff --git a/man/phymltest.Rd b/man/phymltest.Rd
index 737beed1d5677bef35a72e275c952abec77d319f..365620fd2e4a0dfa3c8bb9830dc66947a3f6f2c6 100644 (file)
--- a/man/phymltest.Rd
+++ b/man/phymltest.Rd
@@ -37,15 +37,15 @@ phymltest(seqfile, format = "interleaved", itree = NULL,
     title).}
   \item{col}{a colour used for the segments showing the AIC values (blue
     by default).}
-  \item{...}{further arguments passed to or from other methods.}
+  \item{\dots}{further arguments passed to or from other methods.}
 }
 \description{
   This function calls PhyML and fits successively 28 models of DNA
   evolution. The results are saved on disk, as PhyML usually does, and
-  returned in R as a vector with the log-likelihood value of each model.
+  returned in \R as a vector with the log-likelihood value of each model.
 }
 \details{
-  The present function requires version 3.0 of PhyML; it won't work with
+  The present function requires version 3.0.1 of PhyML; it won't work with
   older versions.
 
   The user must take care to set correctly the three different paths
@@ -115,9 +115,9 @@ phymltest(seqfile, format = "interleaved", itree = NULL,
   Guindon, S. and Gascuel, O. (2003) A simple, fast, and accurate
   algorithm to estimate large phylogenies by maximum likelihood.
   \emph{Systematic Biology}, \bold{52}, 696--704.
-  \url{http://atgc.lirmm.fr/phyml/}
+  \url{http://www.atgc-montpellier.fr/phyml/}
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{read.tree}}, \code{\link{write.tree}},
   \code{\link{dist.dna}}