cleaning of C files and update on simulation of OU process

[ape.git] / man / identify.phylo.Rd

diff --git a/man/identify.phylo.Rd b/man/identify.phylo.Rd
index 3cd3af9cac7c6179b2967be3251c491bb4a1cc50..c7fd7af0a00e865f47ddd9238cab7d5902a1bb1f 100644 (file)
--- a/man/identify.phylo.Rd
+++ b/man/identify.phylo.Rd
@@ -3,7 +3,7 @@
 \title{Graphical Identification of Nodes and Tips}
 \usage{
 \method{identify}{phylo}(x, nodes = TRUE, tips = FALSE,
-                  labels = FALSE, ...)
+                  labels = FALSE, quiet = FALSE, ...)
 }
 \arguments{
   \item{x}{an object of class \code{"phylo"}.}
@@ -12,7 +12,9 @@
     information.}
   \item{labels}{a logical specifying whether to return the labels; by
     default only the numbers are returned.}
-  \item{...}{further arguments to be passed to or from other methods.}
+  \item{quiet}{a logical controlling whether to print a message inviting
+    the user to click on the tree.}
+  \item{\dots}{further arguments to be passed to or from other methods.}
 }
 \description{
   This function allows to identify a clade on a plotted tree by clicking
@@ -40,7 +42,7 @@
   \code{"nodes"} with the identification of the tips and/or of the
   nodes.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{plot.phylo}}, \code{\link{nodelabels}},
   \code{\link[graphics]{identify}} for the generic function