Minimum Evolution algorithm of Desper and Gascuel (2002).
}
\usage{
- fastme.bal(X, nni = TRUE)
+ fastme.bal(X, nni = TRUE, spr = TRUE, tbr = TRUE)
fastme.ols(X, nni = TRUE)
}
\arguments{
\item{X}{a distance matrix; may be an object of class \code{"dist"}.}
\item{nni}{a boolean value; TRUE to do NNIs (default).}
+ \item{spr}{ditto for SPRs.}
+ \item{tbr}{ditto for TBRs.}
}
\value{
an object of class \code{"phylo"}.
\code{\link{dist.dna}}, \code{\link{mlphylo}}
}
\examples{
-\dontrun{
### From Saitou and Nei (1987, Table 1):
x <- c(7, 8, 11, 13, 16, 13, 17, 5, 8, 10, 13,
10, 14, 5, 7, 10, 7, 11, 8, 11, 8, 12,
trw <- fastme.bal(dist.dna(woodmouse))
plot(trw)
}
-}
\keyword{models}