provisional version of the new reorder.phylo()

[ape.git] / man / dist.topo.Rd

diff --git a/man/dist.topo.Rd b/man/dist.topo.Rd
index 2c2a28525aa026c6ec5583cf0206b9eb3ccc5496..d1542add7b9ac0e1233f11bbba209dd2305ff73f 100644 (file)
--- a/man/dist.topo.Rd
+++ b/man/dist.topo.Rd
@@ -34,7 +34,8 @@ dist.topo(x, y, method = "PH85")
   similar bipartitions (or splits) in both trees.
 }
 \note{
-  The geodesic distance of Billera et al. (2001) has been disabled.
+  The geodesic distance of Billera et al. (2001) has been disabled: see
+  the package \pkg{distory} on CRAN.
 }
 \references{
   Billera, L. J., Holmes, S. P. and Vogtmann, K. (2001) Geometry of the
@@ -45,8 +46,8 @@ dist.topo(x, y, method = "PH85")
   phylogeny algorithms under equal and unequal evolutionary rates.
   \emph{Molecular Biology and Evolution}, \bold{11}, 459--468.
 
-  Nei, M. and Kumar, S. (2000) \emph{Molecular evolution and
-  phylogenetics}. Oxford: Oxford University Press.
+  Nei, M. and Kumar, S. (2000) \emph{Molecular Evolution and
+  Phylogenetics}. Oxford: Oxford University Press.
 
   Penny, D. and Hendy, M. D. (1985) The use of tree comparison
   metrics. \emph{Systemetic Zoology}, \bold{34}, 75--82.
@@ -55,7 +56,7 @@ dist.topo(x, y, method = "PH85")
   testing minimum-evolution trees. \emph{Molecular Biology and
     Evolution}, \bold{9}, 945--967.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{read.tree}} to read tree files in Newick format,
   \code{\link{cophenetic.phylo}}, \code{\link{prop.part}}