similar bipartitions (or splits) in both trees.
}
\note{
- The geodesic distance of Billera et al. (2001) has been disabled.
+ The geodesic distance of Billera et al. (2001) has been disabled: see
+ the package \pkg{distory} on CRAN.
}
\references{
Billera, L. J., Holmes, S. P. and Vogtmann, K. (2001) Geometry of the
phylogeny algorithms under equal and unequal evolutionary rates.
\emph{Molecular Biology and Evolution}, \bold{11}, 459--468.
- Nei, M. and Kumar, S. (2000) \emph{Molecular evolution and
- phylogenetics}. Oxford: Oxford University Press.
+ Nei, M. and Kumar, S. (2000) \emph{Molecular Evolution and
+ Phylogenetics}. Oxford: Oxford University Press.
Penny, D. and Hendy, M. D. (1985) The use of tree comparison
metrics. \emph{Systemetic Zoology}, \bold{34}, 75--82.
testing minimum-evolution trees. \emph{Molecular Biology and
Evolution}, \bold{9}, 945--967.
}
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
\seealso{
\code{\link{read.tree}} to read tree files in Newick format,
\code{\link{cophenetic.phylo}}, \code{\link{prop.part}}