fix in read.dna and change in write.dna

[ape.git] / man / dist.gene.Rd

diff --git a/man/dist.gene.Rd b/man/dist.gene.Rd
index 45ac67ae4cf74bb3b8aa7874757bd18f06590aeb..6d5ccb3d1c84b894a001f0673cdd4b330b8f4e56 100644 (file)
--- a/man/dist.gene.Rd
+++ b/man/dist.gene.Rd
@@ -6,7 +6,7 @@ dist.gene(x, method = "pairwise", pairwise.deletion = FALSE,
           variance = FALSE)
 }
 \arguments{
-  \item{x}{a matrix or a data frame.}
+  \item{x}{a matrix or a data frame (will be coerced as a matrix).}
   \item{method}{a character string specifying the method used to compute
     the distances; two choices are available: \code{"pairwise"} and
     \code{"percentage"}, or any unambiguous abbreviation of these.}
@@ -40,10 +40,10 @@ dist.gene(x, method = "pairwise", pairwise.deletion = FALSE,
   Missing data (\code{NA}) are coded and treated in R's usual way.
 }
 \value{
-  an object of class \link[stats]{"dist"}. If \code{variance = TRUE} an
+  an object of class \code{dist}. If \code{variance = TRUE} an
   attribute called \code{"variance"} is given to the returned object.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{dist.dna}}, \code{\link{cophenetic.phylo}},
   \code{\link[stats]{dist}}