various bug fixes

[ape.git] / man / corPagel.Rd

diff --git a/man/corPagel.Rd b/man/corPagel.Rd
index 7248f65f25ef36afa1f43e88715b050a30aa9517..096a24844d61300d13e28e8697c1cde1fe4530fd 100644 (file)
--- a/man/corPagel.Rd
+++ b/man/corPagel.Rd
@@ -11,11 +11,11 @@ corPagel(value, phy, form = ~1, fixed = FALSE)
 }
 \arguments{
   \item{value}{the (initial) value of the parameter
-    \eqn{\gamma}{gamma}.}
+    \eqn{\lambda}{lambda}.}
   \item{phy}{an object of class \code{"phylo"}.}
   \item{form}{(ignored).}
   \item{fixed}{a logical specifying whether \code{gls} should
-    estimate \eqn{\gamma}{gamma} (the default) or keep it fixed.}
+    estimate \eqn{\lambda}{lambda} (the default) or keep it fixed.}
   \item{object}{an (initialized) object of class \code{"corPagel"}.}
   \item{covariate}{(ignored).}
   \item{corr}{a logical value specifying whether to return the
@@ -29,13 +29,13 @@ corPagel(value, phy, form = ~1, fixed = FALSE)
 \description{
   The correlation structure from the present model is derived from the
   Brownian motion model by multiplying the off-diagonal elements (i.e.,
-  the covariances) by \eqn{\gamma}{gamma}. The variances are thus the
+  the covariances) by \eqn{\lambda}{lambda}. The variances are thus the
   same than for a Brownian motion model.
 }
 \value{
   an object of class \code{"corPagel"}, the coefficients from an object
   of this class, or the correlation matrix of an initialized object of
-  this class. In most situations, only \code{corPagel()} will be called
+  this class. In most situations, only \code{corPagel} will be called
   by the user.
 }
 \author{Emmanuel Paradis}