\alias{corPhyl}
\title{Phylogenetic Correlation Structures}
\description{
- Standard classes of phylogenetic correlation structures (\code{corPhyl}) available in \pkg{ape}.
-}
-\value{
- Available standard classes:
- \item{corBrownian}{Brownian model (Felsenstein 1985),}
- \item{corMartins}{The covariance matrix defined in Martins and Hansen (1997),}
- \item{corGrafen}{The covariance matrix defined in Grafen (1989).}
- See classes documentation for reference and detailed description.
+ Classes of phylogenetic correlation structures (\code{"corPhyl"})
+ available in \pkg{ape}.
+
+ \itemize{
+ \item{corBrownian}{Brownian motion model (Felsenstein 1985)}
+ \item{corMartins}{The covariance matrix defined in Martins and Hansen
+ (1997)}
+ \item{corGrafen}{The covariance matrix defined in Grafen (1989)}
+ \item{corPagel}{The covariance matrix defined in Freckelton et al. (2002)}
+ \item{corBlomberg}{The covariance matrix defined in Blomberg et al. (2003)}
+ }
+
+ See the help page of each class for references and detailed
+ description.
}
\seealso{
- \code{\link[nlme]{corClasses}} and \code{\link[nlme]{gls}} in the \pkg{nlme} librarie,
- \code{\link{corBrownian}}, \code{\link{corMartins}}, \code{\link{corGrafen}}.
+ \code{\link[nlme]{corClasses}} and \code{\link[nlme]{gls}} in the
+ \pkg{nlme} librarie, \code{\link{corBrownian}},
+ \code{\link{corMartins}}, \code{\link{corGrafen}},
+ \code{\link{corPagel}}, \code{\link{corBlomberg}}
}
-\author{Julien Dutheil \email{julien.dutheil@univ-montp2.fr}}
+\author{Julien Dutheil \email{julien.dutheil@univ-montp2.fr}, Emmanuel
+ Paradis}
\examples{
library(nlme)
cat("((((Homo:0.21,Pongo:0.21):0.28,",