Higgins, D. G. and Thompson, J. D. (2003) Multiple sequence alignment
with the Clustal series of programs. \emph{Nucleic Acids Research}
\bold{31}, 3497--3500.
-
\url{http://www.clustal.org/}
Edgar, R. C. (2004) MUSCLE: Multiple sequence alignment with high
accuracy and high throughput. \emph{Nucleic Acids Research},
\bold{32}, 1792--1797.
-
\url{http://www.drive5.com/muscle/muscle_userguide3.8.html}
Notredame, C., Higgins, D. and Heringa, J. (2000) T-Coffee: A novel
method for multiple sequence alignments. \emph{Journal of Molecular
Biology}, \bold{302}, 205--217.
-
\url{http://www.tcoffee.org/Documentation/t_coffee/t_coffee_technical.htm}
}
\author{Emmanuel Paradis}
\seealso{
- \code{\link{image.DNAbin}}, \code{\link{del.gaps}}
+ \code{\link{image.DNAbin}}, \code{\link{del.gaps}}, \code{\link{alex}}
The package \pkg{phyloch} which has similar functions for the MAFFT
and Prank.