some big fixes for ape 2.7-1

[ape.git] / man / boot.phylo.Rd

diff --git a/man/boot.phylo.Rd b/man/boot.phylo.Rd
index d46e0959a2ce8abe8d131766ae361cbed4e380fb..448a4d8ac0a4ad4fe7a176114b819883451db71f 100644 (file)
--- a/man/boot.phylo.Rd
+++ b/man/boot.phylo.Rd
@@ -44,7 +44,9 @@ prop.clades(phy, ..., part = NULL)
   These functions analyse bipartitions found in a series of trees.
 
   \code{prop.part} counts the number of bipartitions found in a series
-  of trees given as \code{\dots}.
+  of trees given as \code{\dots}. If a single tree is passed, the
+  returned object is a list of vectors with the tips descending from
+  each node (i.e., clade compositions indexed by node number).
 
   \code{prop.clades} counts the number of times the bipartitions present
   in \code{phy} are present in a series of trees given as \code{\dots} or
@@ -111,7 +113,7 @@ prop.clades(phy, ..., part = NULL)
   Felsenstein, J. (1985) Confidence limits on phylogenies: an approach
   using the bootstrap. \emph{Evolution}, \bold{39}, 783--791.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{dist.topo}}, \code{\link{consensus}}, \code{\link{nodelabels}}
 }