cleaning of C files and update on simulation of OU process

[ape.git] / man / as.matching.Rd

diff --git a/man/as.matching.Rd b/man/as.matching.Rd
index 9595688353647a0629d88058de5c5b2a84f6fc4e..29d665c5f3db1133c6b4b363b9f76275b53740e5 100644 (file)
--- a/man/as.matching.Rd
+++ b/man/as.matching.Rd
@@ -1,5 +1,6 @@
 \name{as.matching}
 \alias{as.matching}
+\alias{matching}
 \alias{as.matching.phylo}
 \alias{as.phylo.matching}
 \title{Conversion Between Phylo and Matching Objects}
@@ -33,9 +34,8 @@ as.matching(x, ...)
   \code{as.matching} returns an object of class \code{"matching"} with
   the following component:
 
-  \item{matching}{a three-column numeric matrix where the first two
-    columns represent the sibling pairs, and the third one the
-    corresponding ancestor.}
+  \item{matching}{a two-column numeric matrix where the columns
+    represent the sibling pairs.}
   \item{tip.label}{(optional) a character vector giving the tip labels
     where the ith element is the label of the tip numbered i in
     \code{matching}.}
@@ -49,7 +49,7 @@ as.matching(x, ...)
 \note{
   Branch lengths are not supported in the present version.
 }
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \references{
   Diaconis, P. W. and Holmes, S. P. (1998) Matchings and phylogenetic
   trees. \emph{Proceedings of the National Academy of Sciences USA},