various bug fixes

[ape.git] / man / ape-internal.Rd

diff --git a/man/ape-internal.Rd b/man/ape-internal.Rd
index 602f407b6e9489dcefc1e78f107bdba7eeb6b6bb..838a3a3b706fd7851cf7f8e41a592e0df06d6638 100644 (file)
--- a/man/ape-internal.Rd
+++ b/man/ape-internal.Rd
@@ -8,19 +8,6 @@
 \alias{mant.zstat}
 \alias{lower.triang}
 \alias{clado.build}
-\alias{getDurations}
-\alias{getEdgeLengths}
-\alias{getExternalParams}
-\alias{getNEdges}
-\alias{getNFreeParams}
-\alias{getRates}
-\alias{objFuncLogScale}
-\alias{optimTree}
-\alias{phylogram}
-\alias{prepareTree}
-\alias{setTree}
-\alias{nEdges}
-\alias{nNodes}
 \alias{phylogram.plot}
 \alias{cladogram.plot}
 \alias{circular.plot}
@@ -35,17 +22,17 @@
 \alias{pos.move}
 \alias{BOTHlabels}
 \alias{chronopl.cv}
-\alias{prepareDNA}
 \alias{floating.pie.asp}
 \alias{checkLabel}
 \alias{getMRCA}
 \alias{plotCophylo2}
 \alias{plotPhyloCoor}
+\alias{integrateTrapeze}
+\alias{CDF.birth.death}
+\alias{postprocess.prop.part}
+\alias{ONEwise}
 \title{Internal Ape Functions}
 \description{
-  Internal ape functions.
-}
-\note{
-  These are not to be called by the user (unless you know what you're doing).
+  Internal \pkg{ape} functions.
 }
 \keyword{internal}