new code from Pierre Legendre

[ape.git] / man / ape-internal.Rd

diff --git a/man/ape-internal.Rd b/man/ape-internal.Rd
index 441d39f9b1fb8b522b35a072211ebd860d819a57..3f48719f813fd9b863b4b482177e517a8ca0f1da 100644 (file)
--- a/man/ape-internal.Rd
+++ b/man/ape-internal.Rd
@@ -19,13 +19,8 @@
 \alias{phylogram}
 \alias{prepareTree}
 \alias{setTree}
-\alias{buildTreeFromPhylo}
-\alias{destroyTree}
-\alias{getError}
 \alias{nEdges}
 \alias{nNodes}
-\alias{klastorin_nTips}
-\alias{getMisawaTajima}
 \alias{phylogram.plot}
 \alias{cladogram.plot}
 \alias{circular.plot}
@@ -40,18 +35,16 @@
 \alias{pos.move}
 \alias{BOTHlabels}
 \alias{chronopl.cv}
-\alias{prepareDNA}
 \alias{floating.pie.asp}
 \alias{checkLabel}
 \alias{getMRCA}
-\alias{plot.cophylo2}
-\alias{plot.phylo.coor}
+\alias{plotCophylo2}
+\alias{plotPhyloCoor}
 \title{Internal Ape Functions}
 \description{
-  Internal ape functions.
+  Internal \pkg{ape} functions.
 }
 \note{
-  These are not to be called by the user (or in some cases are just
-  waiting for proper documentation to be written).
+  These are not to be called by the user (unless you know what you're doing).
 }
 \keyword{internal}