class MakeGroupCommand : public Command {
public:
- MakeGroupCommand(string);
+ MakeGroupCommand(string);
+ MakeGroupCommand();
~MakeGroupCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
private:
- string fastaFileName, groups, outputDir, filename;
+ string fastaFileName, groups, outputDir, filename, output;
vector<string> fastaFileNames;
- vector<string> groupsNames;
+ vector<string> groupsNames, outputNames;
+ map<string, vector<string> > outputTypes;
bool abort;
};