public:
MakeGroupCommand(string);
MakeGroupCommand();
- ~MakeGroupCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
+ ~MakeGroupCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "make.group"; }
+ string getCommandCategory() { return "General"; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Make.group"; }
+ string getDescription() { return "creates a group file"; }
+
int execute();
- void help();
+ void help() { m->mothurOut(getHelpString()); }
private:
- string fastaFileName, groups, outputDir, filename;
+ string fastaFileName, groups, outputDir, filename, output;
vector<string> fastaFileNames;
vector<string> groupsNames, outputNames;
- map<string, vector<string> > outputTypes;
bool abort;
};