# Macros
#
-# Optimize to level 3:
+USEMPI ?= no
+64BIT_VERSION ?= yes
+USEREADLINE ?= yes
+CYGWIN_BUILD ?= no
+USECOMPRESSION ?= no
+MOTHUR_FILES = "\"../release\""
+RELEASE_DATE = "\"2/7/2011\""
+VERSION = "\"1.16.0\""
+# Optimize to level 3:
CXXFLAGS += -O3
-MOTHUR_FILES = "\"../Release\""
+ifeq ($(strip $(64BIT_VERSION)),yes)
+ #if you are using centos uncomment the following lines
+ #CXX = g++44
+
+ #if you are a mac user use the following line
+ TARGET_ARCH += -arch x86_64
+
+ #if you are a linux user use the following line
+ #CXXFLAGS += -mtune=native -march=native -m64
+
+ CXXFLAGS += -DBIT_VERSION
+endif
-RELEASE_DATE = "\"9/17/2010\""
-VERSION = "\"1.13.0\""
CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION}
CXXFLAGS += -DMOTHUR_FILES=${MOTHUR_FILES}
endif
-CYGWIN_BUILD ?= no
ifeq ($(strip $(CYGWIN_BUILD)),yes)
CXXFLAGS += -mno-cygwin
LDFLAGS += -mno-cygwin
endif
-64BIT_VERSION ?= yes
-
-ifeq ($(strip $(64BIT_VERSION)),yes)
- TARGET_ARCH += -arch x86_64
- CXXFLAGS += -DBIT_VERSION
-
- #if you are using centos uncomment the following lines
- #CXX = g++44
- #CXXFLAGS += -mtune=native -march=native -m64
-endif
-
# if you do not want to use the readline library, set this to no.
# make sure you have the library installed
-USEREADLINE ?= yes
ifeq ($(strip $(USEREADLINE)),yes)
CXXFLAGS += -DUSE_READLINE
- LDFLAGS += \
+ LIBS = \
-lreadline\
-lncurses
endif
-USEMPI ?= no
ifeq ($(strip $(USEMPI)),yes)
CXX = mpic++
endif
# if you want to enable reading and writing of compressed files, set to yes.
-# The default is no. this may only work on unix-like systems.
+# The default is no. this may only work on unix-like systems, not for windows.
-USECOMPRESSION ?= no
ifeq ($(strip $(USECOMPRESSION)),yes)
CXXFLAGS += -DUSE_COMPRESSION
OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
mothur : $(OBJECTS)
- $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS)
+ $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
+
+ strip mothur
install : mothur
- cp mothur ../Release/mothur
+# cp mothur ../Release/mothur
%.o : %.c %.h
$(COMPILE.c) $(OUTPUT_OPTION) $<