CXXFLAGS += -O3
-MOTHUR_FILES = "\"../Release\""
+64BIT_VERSION ?= yes
+
+ifeq ($(strip $(64BIT_VERSION)),yes)
+ #if you are using centos uncomment the following lines
+ #CXX = g++44
+
+ #if you are a mac user use the following line
+ TARGET_ARCH += -arch x86_64
+
+ #if you are a linux user use the following line
+ #CXXFLAGS += -mtune=native -march=native -m64
+
+ CXXFLAGS += -DBIT_VERSION
+endif
+
+MOTHUR_FILES = "\"../release\""
+
+RELEASE_DATE = "\"12/10/2010\""
+VERSION = "\"1.15.0\""
+
+CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION}
+
ifeq ($(strip $(MOTHUR_FILES)),"\"Enter_your_default_path_here\"")
else
CXXFLAGS += -DMOTHUR_FILES=${MOTHUR_FILES}
LDFLAGS += -mno-cygwin
endif
-64BIT_VERSION ?= yes
-
-ifeq ($(strip $(64BIT_VERSION)),yes)
- TARGET_ARCH += -arch x86_64
- CXXFLAGS += -DBIT_VERSION
-
- #if you are using centos uncomment the following lines
- #CC = g++44
- #CXXFLAGS += -mtune=native -march=native -m64
-endif
-
# if you do not want to use the readline library, set this to no.
# make sure you have the library installed
ifeq ($(strip $(USEREADLINE)),yes)
CXXFLAGS += -DUSE_READLINE
- LDFLAGS += \
+ LIBS = \
-lreadline\
-lncurses
endif
CXXFLAGS += -DUSE_MPI
endif
+# if you want to enable reading and writing of compressed files, set to yes.
+# The default is no. this may only work on unix-like systems, not for windows.
+
+USECOMPRESSION ?= no
+
+ifeq ($(strip $(USECOMPRESSION)),yes)
+ CXXFLAGS += -DUSE_COMPRESSION
+endif
+
#
# INCLUDE directories for mothur
#
#
OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
+OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
mothur : $(OBJECTS)
- $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS)
+ $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
+
+ strip mothur
install : mothur
- cp mothur ../Release/mothur
-
+# cp mothur ../Release/mothur
+
+%.o : %.c %.h
+ $(COMPILE.c) $(OUTPUT_OPTION) $<
%.o : %.cpp %.h
$(COMPILE.cpp) $(OUTPUT_OPTION) $<
%.o : %.cpp %.hpp