typedef struct {
int gap_open;
int gap_ext;
- int gap_end;
+ int gap_end_open;
+ int gap_end_ext;
int *matrix;
int row;
extern "C" {
#endif
- uint32_t *ka_global_core(uint8_t *seq1, int len1, uint8_t *seq2, int len2, const ka_param_t *ap, int *_score, int *n_cigar);
-
+ uint32_t *ka_global_core(uint8_t *seq1, int len1, uint8_t *seq2, int len2, const ka_param_t *ap,
+ int *_score, int *n_cigar);
#ifdef __cplusplus
}
#endif
-extern ka_param_t ka_param_blast; /* = { 5, 2, 2, aln_sm_blast, 5, 50 }; */
+extern ka_param_t ka_param_blast; /* = { 5, 2, 5, 2, aln_sm_blast, 5, 50 }; */
#endif