typedef struct {
int gap_open;
int gap_ext;
- int gap_end;
+ int gap_end_open;
+ int gap_end_ext;
int *matrix;
int row;
int band_width;
} ka_param_t;
+typedef struct {
+ float d, e;
+ int bw;
+} ka_probpar_t;
+
#ifdef __cplusplus
extern "C" {
#endif
}
#endif
-extern ka_param_t ka_param_blast; /* = { 5, 2, 2, aln_sm_blast, 5, 50 }; */
+extern ka_param_t ka_param_blast; /* = { 5, 2, 5, 2, aln_sm_blast, 5, 50 }; */
#endif