int M, I, D;
} dpscore_t;
-/* build score profile for accelerating alignment, in theory */
-static void aln_init_score_array(uint8_t *seq, int len, int row, int *score_matrix, int **s_array)
-{
- int *tmp, *tmp2, i, k;
- for (i = 0; i != row; ++i) {
- tmp = score_matrix + i * row;
- tmp2 = s_array[i];
- for (k = 0; k != len; ++k)
- tmp2[k] = tmp[seq[k]];
- }
-}
/***************************
* banded global alignment *
***************************/