//**********************************************************************************************************************
-HelpCommand::HelpCommand(string option){
+HelpCommand::HelpCommand(string option) {
validCommands = CommandFactory::getInstance();
}
//**********************************************************************************************************************
int HelpCommand::execute(){
-
validCommands->printCommands(cout);
- mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); mothurOutEndLine();
+ m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
- mothurOutEndLine(); mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+ m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
return 0;
}