string getCommandName() { return "heatmap.sim"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
string getHelpString();
-
+ string getCitation() { return "http://www.mothur.org/wiki/Heatmap.sim"; }
+ string getDescription() { return "generate a heatmap indicating the pairwise distance between multiple samples using a variety of calculators"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
InputData* input;
vector<SharedRAbundVector*> lookup;
vector<Calculator*> heatCalculators;
- ValidCalculators* validCalculator;
HeatMapSim* heatmap;
OptionParser* parser;
bool abort, allLines;
set<string> labels; //holds labels to be used
string format, groups, label, calc, sharedfile, phylipfile, columnfile, namefile, outputDir, inputfile;
vector<string> Estimators, Groups, outputNames;
+ int fontsize;
int runCommandShared();
int runCommandDist();