GroupMap* groupMap;
set<string> labels;
- string fastafile, label, groups, listfile, groupfile, output;
+ string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir;
bool abort, allLines, unique;
vector<string> Groups;
map<string, string> groupFinder;
map<string, string>::iterator it;
vector<Sequence> seqs;
+ vector<string> outputNames;
- void process(ListVector*);
+ int process(ListVector*);
};
//**********************************************************************************************************************