private:
set<string> names;
vector<string> outputNames;
- string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
- bool abort;
+ string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+ bool abort, dups;
int readFasta();
int readName();
int readAlign();
int readAccnos();
int readList();
+ int readTax();
};