class GetRAbundCommand : public Command {
public:
GetRAbundCommand(string);
+ GetRAbundCommand();
~GetRAbundCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
InputData* input;
ListVector* list;
RAbundVector* rabund;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
bool abort, allLines, sorted;
set<string> labels; //holds labels to be used