class GetRAbundCommand : public Command {
public:
+ GetRAbundCommand(string);
GetRAbundCommand();
~GetRAbundCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
+ void help();
private:
GlobalData* globaldata;
InputData* input;
ListVector* list;
RAbundVector* rabund;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
+
+ bool abort, allLines, sorted;
+ set<string> labels; //holds labels to be used
+ string label;
+
+
};
#endif