*/
#include "command.hpp"
-#include "readmatrix.hpp"
-
-class GlobalData;
class GetgroupCommand : public Command {
public:
+ GetgroupCommand(string);
GetgroupCommand();
- ~GetgroupCommand();
- int execute();
+ ~GetgroupCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "get.group"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getOutputFileNameTag(string, string) { return ""; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+ string getDescription() { return "outputs group names"; }
+
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
- GlobalData* globaldata;
- GroupMap* groupMap;
+
+ string outputFile, sharedfile, outputDir;
+ vector<string> outputNames;
+ ofstream out;
+ ifstream in;
+ bool abort;
+
};
#endif