groupmap = globaldata->gGroupmap;
string name, group;
- filehandle >> numSeqs >> name;
+ filehandle >> numSeqs >> name;
+
//make the matrix filled with zeros
matrix.resize(numSeqs);
for(int i = 0; i < numSeqs; i++) {
break;
}
}
-
+ cout << "here" << endl;
//read rest of matrix
if (square == true) { readSquareMatrix(filehandle); }
else { readLTMatrix(filehandle); }
/**************************************************************************/
int FullMatrix::readSquareMatrix(ifstream& filehandle) {
try {
-
+ cout << "square" << endl;
Progress* reading;
reading = new Progress("Reading matrix: ", numSeqs * numSeqs);
/**************************************************************************/
int FullMatrix::readLTMatrix(ifstream& filehandle) {
try {
+ cout << "lt" << endl;
Progress* reading;
reading = new Progress("Reading matrix: ", numSeqs * (numSeqs - 1) / 2);