int index = nseqs;
map<int, float> rowMap;
map<int, float>::iterator itRow;
-
+ rowPos.resize(nseqs, -1);
for(int i=0;i<nseqs;i++){
fileHandle >> name;
-
+
list->set(i, name);
for(int j=0;j<nseqs;j++){
fileHandle >> distance;
-
+
if (distance == -1) { distance = 1000000; }
if((distance < cutoff) && (j != i)){
reading->update(index);
}
+ gobble(fileHandle);
+
//save position in file of each new row
rowPos[i] = out.tellp();