in.seekg(pDataArray->start-1); pDataArray->m->gobble(in); \r
}\r
\r
- pDataArray->count = pDataArray->end;\r
+ pDataArray->count = 0;\r
for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process\r
\r
if (pDataArray->m->control_pressed) { in.close(); pDataArray->count = 1; return 1; }\r
if(pDataArray->trump != '*') { pDataArray->F.doTrump(current); }\r
if(pDataArray->m->isTrue(pDataArray->vertical) || pDataArray->soft != 0) { pDataArray->F.getFreqs(current); }\r
}\r
- \r
+ pDataArray->count++;\r
//report progress\r
- if((i) % 100 == 0){ pDataArray->m->mothurOut(toString(i)); pDataArray->m->mothurOutEndLine(); }\r
+ if((i) % 100 == 0){ pDataArray->m->mothurOutJustToScreen(toString(i)+"\n"); }\r
}\r
\r
- if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOut(toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }\r
+ if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count)+"\n"); }\r
\r
in.close();\r
\r
in.seekg(pDataArray->start-1); pDataArray->m->gobble(in); \r
}\r
\r
- pDataArray->count = pDataArray->end;\r
+ pDataArray->count = 0;\r
for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process\r
\r
if (pDataArray->m->control_pressed) { in.close(); out.close(); pDataArray->count = 1; return 1; }\r
\r
out << '>' << seq.getName() << endl << filterSeq << endl;\r
}\r
- \r
+ pDataArray->count++;\r
//report progress\r
- if((i) % 100 == 0){ pDataArray->m->mothurOut(toString(i)); pDataArray->m->mothurOutEndLine(); }\r
+ if((i) % 100 == 0){ pDataArray->m->mothurOutJustToScreen(toString(i)+"\n"); }\r
}\r
\r
- if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOut(toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }\r
+ if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count)+"\n"); }\r
\r
in.close();\r
out.close();\r