*/
#include "mothur.h"
+#include "mothurout.h"
/* This class represents the fasta file. It reads a fasta file a populates the internal data structure "data".
class FastaMap {
public:
- FastaMap() {};
+ FastaMap() { m = MothurOut::getInstance(); }
~FastaMap() {};
string getGroupName(string); //pass a sequence name get its group
map<string, group> data; //sequence, groupinfo - condensed representation of file
map<string, string> seqmap; //name, sequence - uncondensed representation of file
+ MothurOut* m;
};
#endif